species:   Pimic
pid:       PID1824
parent:    Pmic_miR-1
paralog:   
locus:     scaffold_12:478925-479041
matures:   ['GUUGAGCCUGAUACAGUAGCCU', 'GCUACCGUUGUCAGACUUAACGU']
srr:       SRX5082468
genome:    /Users/jax/+Genomes/Fungal_genomes/Pimic.Pismi1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRX5082468.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRX5082468.cram scaffold_12:478925-479041

0 out of bounds
4 alignments
4 proper strand
4 stranded perfect matches

************************                                                                     *********************** 
UGCUACCGUUGUCAGACUUAACGUGAAACGUGCAGGAAUGCAGGUGCGCUAGUAAUAUCAGGCUUCACUCUUGUAUCAUUCUCAGGCCGCCUCAGGUUGAGCCUGAUACAGUAGCCU
.(((((.((.(((((.((((((.(((..((.((..(((((((((.(.(..(((........))).).).))))))).....))..))))..))).)))))).))))))).)))))..
-----------------------------------------------------------------------------------------------GUUGAGCCUGAUACAGUAGCCU l=22 a=1 c
-GCUACCGUUGUCAGACUUAACGU--------------------------------------------------------------------------------------------- l=23 a=0 c*
-----------------------------------------------------------------------------------------------GUUGAGCCUGAUACAGUAGCC- l=21 a=2 ma
--CUACCGUUGUCAGACUUAACGU--------------------------------------------------------------------------------------------- l=22 a=0 ma*

-----------------------------------------------------------------------------------------------GUUGAGCCUGAUACAGUAGCC- l=21 a=2 (ma)
-----------------------------------------------------------------------------------------------GUUGAGCCUGAUACAGUAGCCU l=22 a=1 (c)
-GCUACCGUUGUCAGACU--------------------------------------------------------------------------------------------------- l=17 a=1 

mb-01111
ax-1011111
ku-01
ss-101111111110
fn-111
